tulp4 protein (Cottoperca gobio) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

tulp4

TUB like protein 4. (1799 aa)

Predicted Functional Partners:

rnf7

0.862

CUL5

0.858

CUL5-2

0.858

LOC115011659

0.730

ELOB

0.730

greb1l

0.728

ENSCGOP00000012949

0.726

rbx1

0.720

eloc

0.703

serac1

0.695

Your Current Organism:

Cottoperca gobio

NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL5	CUL5-2	ENSCGOP00000015502	ENSCGOP00000023962	Cullin 5.	Cullin-5-like.	0.900
CUL5	ELOB	ENSCGOP00000015502	ENSCGOP00000021188	Cullin 5.	Elongin B.	0.974
CUL5	LOC115011659	ENSCGOP00000015502	ENSCGOP00000010644	Cullin 5.	elongin-B.	0.974
CUL5	eloc	ENSCGOP00000015502	ENSCGOP00000030371	Cullin 5.	Elongin C.	0.992
CUL5	rbx1	ENSCGOP00000015502	ENSCGOP00000018163	Cullin 5.	Ring-box 1.	0.990
CUL5	rnf7	ENSCGOP00000015502	ENSCGOP00000022407	Cullin 5.	Ring finger protein 7.	0.988
CUL5	tulp4	ENSCGOP00000015502	ENSCGOP00000012772	Cullin 5.	TUB like protein 4.	0.858
CUL5-2	CUL5	ENSCGOP00000023962	ENSCGOP00000015502	Cullin-5-like.	Cullin 5.	0.900
CUL5-2	ELOB	ENSCGOP00000023962	ENSCGOP00000021188	Cullin-5-like.	Elongin B.	0.974
CUL5-2	LOC115011659	ENSCGOP00000023962	ENSCGOP00000010644	Cullin-5-like.	elongin-B.	0.974
CUL5-2	eloc	ENSCGOP00000023962	ENSCGOP00000030371	Cullin-5-like.	Elongin C.	0.992
CUL5-2	rbx1	ENSCGOP00000023962	ENSCGOP00000018163	Cullin-5-like.	Ring-box 1.	0.990
CUL5-2	rnf7	ENSCGOP00000023962	ENSCGOP00000022407	Cullin-5-like.	Ring finger protein 7.	0.988
CUL5-2	tulp4	ENSCGOP00000023962	ENSCGOP00000012772	Cullin-5-like.	TUB like protein 4.	0.858
ELOB	CUL5	ENSCGOP00000021188	ENSCGOP00000015502	Elongin B.	Cullin 5.	0.974
ELOB	CUL5-2	ENSCGOP00000021188	ENSCGOP00000023962	Elongin B.	Cullin-5-like.	0.974
ELOB	LOC115011659	ENSCGOP00000021188	ENSCGOP00000010644	Elongin B.	elongin-B.	0.901
ELOB	eloc	ENSCGOP00000021188	ENSCGOP00000030371	Elongin B.	Elongin C.	0.994
ELOB	rbx1	ENSCGOP00000021188	ENSCGOP00000018163	Elongin B.	Ring-box 1.	0.996
ELOB	rnf7	ENSCGOP00000021188	ENSCGOP00000022407	Elongin B.	Ring finger protein 7.	0.989