Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RASGEF1BRasGEF domain family member 1B. (543 aa)    
Predicted Functional Partners:
rasa1
RAS p21 protein activator 1.
    
 
 0.693
rapgef2
Rap guanine nucleotide exchange factor 2.
    
  0.580
CCNK
Cyclin K.
     
  0.577
haus8
HAUS augmin like complex subunit 8.
      
 0.543
LOC115013445
Netrin receptor UNC5D-like.
      
 0.524
LOC115016601
Netrin receptor UNC5D-like.
      
 0.524
ralb
RAS like proto-oncogene B.
    
 0.503
LOC115017465
Ras-related protein ralB-A-like.
    
 0.503
rala
RAS like proto-oncogene A.
    
 0.503
LOC115012331
GTPase HRas-like.
    
  0.496
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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