Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC115017234Protein-lysine 6-oxidase-like. (422 aa)    
Predicted Functional Partners:
mysm1
Myb like, SWIRM and MPN domains 1.
    
  0.546
LOC115026096
Thioredoxin domain-containing protein 3 homolog.
    
 0.533
LOC115017895
Transforming growth factor beta-1 proprotein-like.
    
 0.494
wdr90
WD repeat domain 90.
    
 0.487
slf1
SMC5-SMC6 complex localization factor 1.
   
 0.484
aspn
Asporin.
   
 0.460
tgfb3
Transforming growth factor beta 3.
   
 0.448
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
  0.447
znrf1
Zinc and ring finger 1.
      
 0.437
LOC115014529
E3 ubiquitin-protein ligase NEURL1-like.
    
  0.429
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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