Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115021787Antigen peptide transporter 1-like. (740 aa)    
Predicted Functional Partners:
LOC115015611
Antigen peptide transporter 2-like.
  
  
 
0.969
LOC115015922
Tapasin-like.
   
 0.960
LOC115016122
Tapasin-like.
   
 0.960
pdia3
Protein disulfide isomerase family A member 3.
  
 0.923
LOC115007043
Calreticulin-like.
   
 0.904
LOC115022065
Calreticulin-like.
   
 0.904
LOC115005687
Tapasin-related protein-like.
   
 
 0.875
psmb9
Proteasome 20S subunit beta 9.
   
 0.847
LOC115016198
Proteasome subunit beta type-6-B like protein.
   
 0.823
ENSCGOP00000027375
annotation not available
   
 0.812
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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