Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bphlBiphenyl hydrolase like. (284 aa)    
Predicted Functional Partners:
ppp4r4
Protein phosphatase 4 regulatory subunit 4.
    
 0.778
blmh
Bleomycin hydrolase.
      
 0.727
isoc2
Isochorismatase domain containing 2.
  
 0.709
ndufab1
NADH:ubiquinone oxidoreductase subunit AB1.
   
 0.676
palb2
Partner and localizer of BRCA2.
   
 0.676
PLA2G12B
Group XIIB secretory phospholipase A2-like protein.
      
 0.669
naaladl1
N-acetylated alpha-linked acidic dipeptidase like 1.
      
 0.658
mrpl10
Mitochondrial ribosomal protein L10.
      
 0.656
aasdh
Aminoadipate-semialdehyde dehydrogenase.
    
 0.621
iyd
Iodotyrosine deiodinase.
  
 
 0.616
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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