Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115018865Rap guanine nucleotide exchange factor 6-like. (1072 aa)    
Predicted Functional Partners:
flcn
Folliculin.
    
 0.999
fem1b
Fem-1 homolog B.
    
 
 0.961
atp6v1d
ATPase H+ transporting V1 subunit D.
   
 0.926
stip1
Stress induced phosphoprotein 1.
  
 0.905
lamtor2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
     
 0.862
hspa5
Heat shock protein family A (Hsp70) member 5.
  
 0.816
sil1
SIL1 nucleotide exchange factor.
   
 
 0.811
ash2l
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.809
hsp90ab1
Heat shock protein 90 alpha family class B member 1.
  
 0.808
LOC115029002
Heat shock protein HSP 90-alpha.
  
 0.808
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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