Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC115017480Dehydrogenase/reductase SDR family member 12-like. (320 aa)    
Predicted Functional Partners:
LOC115012702
Claudin-4-like.
   
  
 0.697
ndufab1
NADH:ubiquinone oxidoreductase subunit AB1.
  
 0.622
palb2
Partner and localizer of BRCA2.
  
 0.622
tkfc
Triokinase and FMN cyclase.
    
 0.601
rbp2
Retinol binding protein 2.
     
 0.587
aasdh
Aminoadipate-semialdehyde dehydrogenase.
  
 0.584
FDX1
Ferredoxin 1.
  
 0.580
coq3
Coenzyme Q3, methyltransferase.
   
 0.580
LOC115011150
Ferredoxin-2, mitochondrial-like.
  
 0.580
isoc2
Isochorismatase domain containing 2.
   
 0.573
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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