Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
noctNocturnin. (419 aa)    
Predicted Functional Partners:
cnot1
CCR4-NOT transcription complex subunit 1.
   
 0.915
cnot2
CCR4-NOT transcription complex subunit 2.
    
 0.911
cnot9
CCR4-NOT transcription complex subunit 9.
    
 0.908
LOC115014354
CCR4-NOT transcription complex subunit 7.
   
 0.853
cnot8
CCR4-NOT transcription complex subunit 8.
   
 0.853
LOC115028389
CCR4-NOT transcription complex subunit 4-like.
    
 0.836
LOC115016133
CCR4-NOT transcription complex subunit 3-like.
    
 0.836
cnot4
CCR4-NOT transcription complex subunit 4.
    
 0.836
cnot3
CCR4-NOT transcription complex subunit 3.
    
 0.836
cnot10
CCR4-NOT transcription complex subunit 10.
    
 0.812
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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