Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
gpr1G protein-coupled receptor 1. (359 aa)    
Predicted Functional Partners:
ENSCGOP00000045767
Danio rerio myoglobin (mb), transcript variant 2, mRNA.
      
 0.727
arrb1
Arrestin beta 1.
    
 0.671
LOC115018789
arrestin-C-like.
    
 0.671
LOC115018552
Arrestin red cell.
    
 0.671
LOC115023434
Arrestin red cell-like.
    
 0.671
LOC115007945
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.
    
  0.669
gnb1
G protein subunit beta 1.
    
  0.669
gnb2
G protein subunit beta 2.
    
  0.669
rbm34
RNA binding motif protein 34.
      
 0.664
noc2l
NOC2 like nucleolar associated transcriptional repressor.
      
 0.660
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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