Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubxn6UBX domain protein 6. (437 aa)    
Predicted Functional Partners:
ubxn2a
UBX domain protein 2A.
    
 0.998
LOC115011245
NSFL1 cofactor p47-like.
    
 0.997
LOC115014522
Transitional endoplasmic reticulum ATPase-like.
    
 0.994
vcp
Valosin containing protein.
    
 0.994
UBXN4
UBX domain protein 4.
    
 
 0.992
faf1
Fas associated factor 1.
    
 
 0.990
ubxn1
UBX domain protein 1.
   
 0.990
aspscr1
ASPSCR1 tether for SLC2A4, UBX domain containing.
   
 
 0.985
vcpkmt
Valosin containing protein lysine methyltransferase.
    
 
 0.978
svip
Small VCP interacting protein.
    
 0.974
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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