STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vwa5b2Von Willebrand factor A domain containing 5B2. (1070 aa)    
Predicted Functional Partners:
LOC115016411
poly(ADP-ribose) glycohydrolase-like.
    
 0.851
LOC115020058
poly(ADP-ribose) glycohydrolase-like.
    
 0.851
LOC115024479
poly(ADP-ribose) glycohydrolase-like.
    
 0.851
xpc
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.764
xrcc5
X-ray repair cross complementing 5.
   
 
 0.755
LOC115011050
Histone PARylation factor 1.
    
 
 0.749
ddb2
Damage specific DNA binding protein 2.
    
 0.747
fen1
Flap structure-specific endonuclease 1.
   
 0.738
LOC115022616
Probable flap endonuclease 1 homolog.
   
 0.738
xrcc6
X-ray repair cross complementing 6.
   
 
 0.738
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.