STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxd3Homeobox D3. (396 aa)    
Predicted Functional Partners:
hoxd4
Homeobox D4.
  
  
0.957
LOC115009398
pre-B-cell leukemia transcription factor 1-like.
    
 0.554
pbx1
PBX homeobox 1.
    
 0.554
LOC115021984
pre-B-cell leukemia transcription factor 1.
    
 0.554
pbx3
PBX homeobox 3.
    
 0.554
LOC115021041
pre-B-cell leukemia transcription factor 1-like.
    
 0.554
LOC115011710
pre-B-cell leukemia transcription factor 1-like.
    
 0.554
LOC115026360
Homeobox protein Hox-D9a-like.
   
 
0.545
ENSCGOP00000040810
annotation not available
   
 
0.545
hoxd10
Homeobox D10.
   
 
0.536
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.