STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sacm1lSAC1 like phosphatidylinositide phosphatase. (601 aa)    
Predicted Functional Partners:
pi4ka
Phosphatidylinositol 4-kinase alpha.
    
 0.942
LOC115016603
Phosphatidylinositol 4-kinase alpha-like.
    
 0.942
ocrl
OCRL inositol polyphosphate-5-phosphatase.
 
  
 0.914
synj1
Synaptojanin 1.
    
0.914
inpp5b
Inositol polyphosphate-5-phosphatase B.
 
  
 0.908
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.890
inpp5e
Inositol polyphosphate-5-phosphatase E.
 
  
 0.885
pi4kb
Phosphatidylinositol 4-kinase beta.
    
 0.879
LOC115005241
Phosphatidylinositol 4-kinase beta-like.
    
 0.879
pikfyve
Phosphoinositide kinase, FYVE-type zinc finger containing.
    
 0.878
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.