STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115011389E3 ubiquitin-protein ligase MARCH9-like. (337 aa)    
Predicted Functional Partners:
cnot2
CCR4-NOT transcription complex subunit 2.
    
 
 0.708
faf1
Fas associated factor 1.
    
 
 0.650
faf2
Fas associated factor family member 2.
    
 
 0.650
SPATA5
Spermatogenesis associated 5.
    
 
 0.620
spata5l1
Spermatogenesis associated 5 like 1.
    
 
 0.620
LOC115014522
Transitional endoplasmic reticulum ATPase-like.
    
 
 0.620
vcp
Valosin containing protein.
    
 
 0.620
ENSCGOP00000042998
annotation not available
    
 
 0.597
ube2j2
Ubiquitin conjugating enzyme E2 J2.
    
 
 0.541
c1qtnf12
C1q and TNF related 12.
    
 
 0.541
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.