STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115003642RNA-binding protein 25-like. (813 aa)    
Predicted Functional Partners:
luc7l3
LUC7 like 3 pre-mRNA splicing factor.
   
 0.978
srrm1
Serine and arginine repetitive matrix 1.
   
 0.978
luc7l
LUC7 like.
   
 0.970
LOC115014469
Putative RNA-binding protein Luc7-like 2.
   
 0.970
ddx46
DEAD-box helicase 46.
   
 0.969
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 
 0.956
rbm39
RNA binding motif protein 39.
   
 0.953
snrpc
Small nuclear ribonucleoprotein polypeptide C.
   
 
 0.951
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.949
prpf40a
pre-mRNA processing factor 40 homolog A.
   
 0.948
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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