STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115018179Roundabout homolog 2-like. (1285 aa)    
Predicted Functional Partners:
slit2
Slit guidance ligand 2.
   
 0.815
LOC115015000
Slit homolog 3 protein-like.
   
 0.815
ENSCGOP00000021497
annotation not available
   
 0.815
LOC115019808
Slit homolog 1 protein-like.
   
 0.815
ENSCGOP00000023440
Nyctalopin.
   
 0.810
lrit3
Leucine rich repeat, Ig-like and transmembrane domains 3.
    
 0.770
LOC115020342
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.
    
 0.760
lrit1
Leucine rich repeat, Ig-like and transmembrane domains 1.
    
 0.760
ENSCGOP00000005099
annotation not available
   
 0.684
lrrc3b
Leucine rich repeat containing 3B.
   
 0.684
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.