STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCGOP00000044450annotation not available (246 aa)    
Predicted Functional Partners:
ENSCGOP00000049756
Ubiquitin B.
    
  0.650
LOC115006656
ubiquitin-60S ribosomal protein L40.
    
  0.640
LOC115022757
ubiquitin-60S ribosomal protein L40-like.
    
  0.640
ENSCGOP00000032351
annotation not available
   
  0.633
LOC115012100
Uncharacterized LOC115012100.
   
  0.630
ENSCGOP00000025791
annotation not available
   
 
0.629
LOC115026134
Tissue factor pathway inhibitor-like.
    
  0.627
cd79b
CD79b molecule.
   
 0.622
ENSCGOP00000029711
annotation not available
    
   0.620
cd79a
CD79a molecule.
   
 0.617
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.