STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCGOP00000046261SR-related CTD-associated factor 4b. (477 aa)    
Predicted Functional Partners:
LOC115023473
DNA-directed RNA polymerase II subunit RPB1-like.
   
 
 0.935
rnmt
RNA guanine-7 methyltransferase.
   
 
 0.887
ncbp2
Nuclear cap binding protein subunit 2.
   
 
 0.857
TENT4A
Terminal nucleotidyltransferase 4A-like.
    
 
 0.787
tent4b
Terminal nucleotidyltransferase 4B.
    
 
 0.787
POLR2B
RNA polymerase II subunit B.
   
 
 0.757
exosc10
Exosome component 10.
   
 
 0.756
polr2c
RNA polymerase II subunit C.
   
 
 0.705
pcf11
PCF11 cleavage and polyadenylation factor subunit.
   
 
 0.692
ubxn7
UBX domain protein 7.
   
 
 0.664
Your Current Organism:
Cottoperca gobio
NCBI taxonomy Id: 56716
Other names: Aphritis gobio, C. gobio
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.