LOC109982852 protein (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109982852

Mago homolog, exon junction complex subunit. (123 aa)

Predicted Functional Partners:

rbm8a

0.999

eif4a3

0.999

casc3

0.993

pym1

0.992

upf3a

0.984

LOC109989387

0.984

upf3b

0.984

LOC109993875

0.982

LOC110005683

0.976

ENSLBEP00000016780

0.976

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000016780	LOC109982852	ENSLBEP00000016780	ENSLBEP00000001420	RRM domain-containing protein.	Mago homolog, exon junction complex subunit.	0.976
ENSLBEP00000016780	LOC109989387	ENSLBEP00000016780	ENSLBEP00000037487	RRM domain-containing protein.	RAN binding protein 2.	0.986
ENSLBEP00000016780	LOC109993875	ENSLBEP00000016780	ENSLBEP00000030616	RRM domain-containing protein.	Aly/REF export factor.	0.837
ENSLBEP00000016780	casc3	ENSLBEP00000016780	ENSLBEP00000007025	RRM domain-containing protein.	Casc3 exon junction complex subunit.	0.730
ENSLBEP00000016780	eif4a3	ENSLBEP00000016780	ENSLBEP00000027439	RRM domain-containing protein.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.986
ENSLBEP00000016780	rbm8a	ENSLBEP00000016780	ENSLBEP00000020448	RRM domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.970
ENSLBEP00000016780	upf3a	ENSLBEP00000016780	ENSLBEP00000028508	RRM domain-containing protein.	UPF3A regulator of nonsense mediated mRNA decay.	0.932
ENSLBEP00000016780	upf3b	ENSLBEP00000016780	ENSLBEP00000038475	RRM domain-containing protein.	UPF3B regulator of nonsense mediated mRNA decay.	0.932
LOC109982852	ENSLBEP00000016780	ENSLBEP00000001420	ENSLBEP00000016780	Mago homolog, exon junction complex subunit.	RRM domain-containing protein.	0.976
LOC109982852	LOC109989387	ENSLBEP00000001420	ENSLBEP00000037487	Mago homolog, exon junction complex subunit.	RAN binding protein 2.	0.984
LOC109982852	LOC109993875	ENSLBEP00000001420	ENSLBEP00000030616	Mago homolog, exon junction complex subunit.	Aly/REF export factor.	0.982
LOC109982852	LOC110005683	ENSLBEP00000001420	ENSLBEP00000006957	Mago homolog, exon junction complex subunit.	RRM domain-containing protein.	0.976
LOC109982852	casc3	ENSLBEP00000001420	ENSLBEP00000007025	Mago homolog, exon junction complex subunit.	Casc3 exon junction complex subunit.	0.993
LOC109982852	eif4a3	ENSLBEP00000001420	ENSLBEP00000027439	Mago homolog, exon junction complex subunit.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.999
LOC109982852	pym1	ENSLBEP00000001420	ENSLBEP00000020414	Mago homolog, exon junction complex subunit.	PYM homolog 1, exon junction complex associated factor.	0.992
LOC109982852	rbm8a	ENSLBEP00000001420	ENSLBEP00000020448	Mago homolog, exon junction complex subunit.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.999
LOC109982852	upf3a	ENSLBEP00000001420	ENSLBEP00000028508	Mago homolog, exon junction complex subunit.	UPF3A regulator of nonsense mediated mRNA decay.	0.984
LOC109982852	upf3b	ENSLBEP00000001420	ENSLBEP00000038475	Mago homolog, exon junction complex subunit.	UPF3B regulator of nonsense mediated mRNA decay.	0.984
LOC109989387	ENSLBEP00000016780	ENSLBEP00000037487	ENSLBEP00000016780	RAN binding protein 2.	RRM domain-containing protein.	0.986
LOC109989387	LOC109982852	ENSLBEP00000037487	ENSLBEP00000001420	RAN binding protein 2.	Mago homolog, exon junction complex subunit.	0.984