Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rb1cc1RB1-inducible coiled-coil 1. (1620 aa)    
Predicted Functional Partners:
atg101
Autophagy related 101.
   
 0.999
atg14
Autophagy related 14.
   
 0.999
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
    
 0.998
ENSLBEP00000015535
Uncharacterized protein.
    
 0.998
nrbf2
Nuclear receptor binding factor 2b.
    
 0.998
atg16l1
ATG16 autophagy related 16-like 1 (S. cerevisiae).
   
 0.997
becn1
Beclin 1, autophagy related.
    
 0.996
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.992
pik3r4
Phosphoinositide-3-kinase, regulatory subunit 4.
   
 0.992
ulk2
Unc-51 like autophagy activating kinase 2.
    
 0.990
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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