STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109984074Cell division cycle 34 homolog (S. cerevisiae) b; Belongs to the ubiquitin-conjugating enzyme family. (238 aa)    
Predicted Functional Partners:
ubb
Ubiquitin B.
   
 0.967
rps27a
Ribosomal protein S27a.
    
 0.965
rbx1
Zf-rbx1 domain-containing protein.
   
 0.961
trip12
Thyroid hormone receptor interactor 12.
    
 0.958
ENSLBEP00000020184
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.952
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.950
LOC109976847
Ubiquitin-like domain-containing protein.
   
 0.946
uba6
Ubiquitin like modifier activating enzyme 6.
   
 0.939
uba1
Ubiquitin-like modifier activating enzyme 1; Belongs to the ubiquitin-activating E1 family.
   
 0.936
LOC109980586
Ubiquitin-like modifier activating enzyme 7; Belongs to the ubiquitin-activating E1 family.
   
 0.936
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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