STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110004249Galectin. (313 aa)    
Predicted Functional Partners:
ENSLBEP00000012681
SKICH domain-containing protein.
    
 
 0.923
tax1bp1
Tax1 (human T-cell leukemia virus type I) binding protein 1b.
   
 
 0.686
LOC109989914
Tax1 (human T-cell leukemia virus type I) binding protein 1a.
   
 
 0.612
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
    
 0.567
fam20b
FAM20B glycosaminoglycan xylosylkinase.
    
 0.484
samd7
Sterile alpha motif domain containing 7.
    
 0.438
LOC110001030
Vacuolar protein sorting 13 homolog A.
   
 
 0.418
LOC110003122
Vacuolar protein sorting 13 homolog C.
   
 
 0.418
rpl18
Ribosomal protein L18.
    
 
 0.412
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.