LOC109983525 protein (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109983525

Uncharacterized protein. (1265 aa)

Predicted Functional Partners:

ripk2

0.627

ENSLBEP00000029041

0.607

nek7

0.594

LOC109977857

0.583

atg16l1

0.581

sugt1

0.575

hsp90ab1

0.572

ENSLBEP00000015855

0.572

LOC109993466

0.569

LOC109993885

0.569

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000015855	LOC109983525	ENSLBEP00000015855	ENSLBEP00000001760	BRCA1/BRCA2-containing complex, subunit 3.	Uncharacterized protein.	0.572
ENSLBEP00000015855	hsp90ab1	ENSLBEP00000015855	ENSLBEP00000013706	BRCA1/BRCA2-containing complex, subunit 3.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.403
ENSLBEP00000029041	LOC109983525	ENSLBEP00000029041	ENSLBEP00000001760	CARD domain-containing protein.	Uncharacterized protein.	0.607
ENSLBEP00000029041	ripk2	ENSLBEP00000029041	ENSLBEP00000010906	CARD domain-containing protein.	Receptor-interacting serine-threonine kinase 2.	0.569
LOC109977857	LOC109983525	ENSLBEP00000017952	ENSLBEP00000001760	Uncharacterized protein.	Uncharacterized protein.	0.583
LOC109983525	ENSLBEP00000015855	ENSLBEP00000001760	ENSLBEP00000015855	Uncharacterized protein.	BRCA1/BRCA2-containing complex, subunit 3.	0.572
LOC109983525	ENSLBEP00000029041	ENSLBEP00000001760	ENSLBEP00000029041	Uncharacterized protein.	CARD domain-containing protein.	0.607
LOC109983525	LOC109977857	ENSLBEP00000001760	ENSLBEP00000017952	Uncharacterized protein.	Uncharacterized protein.	0.583
LOC109983525	LOC109993466	ENSLBEP00000001760	ENSLBEP00000003392	Uncharacterized protein.	V-rel avian reticuloendotheliosis viral oncogene homolog A.	0.569
LOC109983525	LOC109993885	ENSLBEP00000001760	ENSLBEP00000030766	Uncharacterized protein.	RHD domain-containing protein.	0.569
LOC109983525	atg16l1	ENSLBEP00000001760	ENSLBEP00000007657	Uncharacterized protein.	ATG16 autophagy related 16-like 1 (S. cerevisiae).	0.581
LOC109983525	hsp90ab1	ENSLBEP00000001760	ENSLBEP00000013706	Uncharacterized protein.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.572
LOC109983525	nek7	ENSLBEP00000001760	ENSLBEP00000036446	Uncharacterized protein.	NIMA-related kinase 7; Belongs to the protein kinase superfamily.	0.594
LOC109983525	ripk2	ENSLBEP00000001760	ENSLBEP00000010906	Uncharacterized protein.	Receptor-interacting serine-threonine kinase 2.	0.627
LOC109983525	sugt1	ENSLBEP00000001760	ENSLBEP00000006231	Uncharacterized protein.	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.	0.575
LOC109993466	LOC109983525	ENSLBEP00000003392	ENSLBEP00000001760	V-rel avian reticuloendotheliosis viral oncogene homolog A.	Uncharacterized protein.	0.569
LOC109993885	LOC109983525	ENSLBEP00000030766	ENSLBEP00000001760	RHD domain-containing protein.	Uncharacterized protein.	0.569
atg16l1	LOC109983525	ENSLBEP00000007657	ENSLBEP00000001760	ATG16 autophagy related 16-like 1 (S. cerevisiae).	Uncharacterized protein.	0.581
atg16l1	ripk2	ENSLBEP00000007657	ENSLBEP00000010906	ATG16 autophagy related 16-like 1 (S. cerevisiae).	Receptor-interacting serine-threonine kinase 2.	0.427
hsp90ab1	ENSLBEP00000015855	ENSLBEP00000013706	ENSLBEP00000015855	Heat shock protein 90, alpha (cytosolic), class B member 1.	BRCA1/BRCA2-containing complex, subunit 3.	0.403