Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC110004253SMP-LTD domain-containing protein. (1091 aa)    
Predicted Functional Partners:
cpeb1
Cytoplasmic polyadenylation element binding protein 1b.
     
  0.709
LOC109980843
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 0.539
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
    
 0.539
ccdc115
Coiled-coil domain containing 115.
    
 0.521
VAPB
VAMP associated protein B and C.
    
 0.505
LOC109975464
Uncharacterized protein.
   
  0.493
bcap29
Uncharacterized protein.
   
  0.493
LOC110004116
B cell receptor associated protein 31.
   
  0.493
stx5
Syntaxin 5A; Belongs to the syntaxin family.
     
  0.480
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
  0.473
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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