STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLBEP00000002261Ufm1-specific peptidase 2. (378 aa)    
Predicted Functional Partners:
ufm1
Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.
    
 
 0.937
LOC109978374
Uncharacterized protein.
   
 
 0.477
LOC109977685
Odr-4 GPCR localization factor homolog.
   
 
 0.477
UFC1
Ubiquitin-fold modifier conjugating enzyme 1.
  
  
 0.455
LOC109986369
Ubiquitin-fold modifier-conjugating enzyme 1-like.
  
  
 0.455
uba5
Ubiquitin-like modifier activating enzyme 5.
      
 0.444
ddrgk1
Uncharacterized protein.
    
 
 0.431
DDRGK1
DDRGK domain containing 1.
    
 
 0.431
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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