STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109991685Ankyrin repeat and SOCS box containing 15b. (598 aa)    
Predicted Functional Partners:
ift81
Intraflagellar transport 81 homolog.
    
 0.712
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.665
LOC110001418
Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta.
  
 
 0.658
LOC109994110
Fleer.
    
 0.653
ift22
Intraflagellar transport 22 homolog (Chlamydomonas).
    
 0.631
mars1
Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.620
LOC109990457
F-box and WD repeat domain containing 11a.
    
 0.619
wdr90
WD repeat domain 90.
    
 0.612
commd8
COMM domain containing 8.
   
  0.608
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
  0.605
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.