STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
armc7Armadillo repeat containing 7. (191 aa)    
Predicted Functional Partners:
rbm48
RNA binding motif protein 48.
  
 
 
 0.969
scnm1
Sodium channel modifier 1.
    
 
 0.920
gpkow
G patch domain and KOW motifs.
   
   0.919
LOC109989156
Peptidylprolyl isomerase (cyclophilin)-like 2.
    
 
 0.916
cript
Cysteine-rich PDZ-binding protein.
    
 
 0.916
phf5a
PHD finger protein 5A.
    
   0.913
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
    
   0.913
snrpd3
Small nuclear ribonucleoprotein Sm D3.
    
   0.913
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
   0.913
crnkl1
Crooked neck pre-mRNA splicing factor 1.
    
   0.913
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.