smg5 protein (Labrus bergylta) - STRING interaction network

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

smg5

SMG5 nonsense mediated mRNA decay factor. (1121 aa)

Predicted Functional Partners:

upf3a

0.981

upf3b

0.981

smg6

0.970

LOC109991964

0.951

upf1

0.951

smg1

0.918

rbm8a

0.898

smg7

0.893

ENSLBEP00000006864

0.893

LOC109978929

0.893

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000006864	LOC109991964	ENSLBEP00000006864	ENSLBEP00000019395	EST1_DNA_bind domain-containing protein.	Uncharacterized protein.	0.916
ENSLBEP00000006864	rbm8a	ENSLBEP00000006864	ENSLBEP00000020448	EST1_DNA_bind domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.956
ENSLBEP00000006864	smg1	ENSLBEP00000006864	ENSLBEP00000005128	EST1_DNA_bind domain-containing protein.	SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.	0.972
ENSLBEP00000006864	smg5	ENSLBEP00000006864	ENSLBEP00000002806	EST1_DNA_bind domain-containing protein.	SMG5 nonsense mediated mRNA decay factor.	0.893
ENSLBEP00000006864	smg6	ENSLBEP00000006864	ENSLBEP00000002772	EST1_DNA_bind domain-containing protein.	SMG6 nonsense mediated mRNA decay factor.	0.843
ENSLBEP00000006864	upf1	ENSLBEP00000006864	ENSLBEP00000037352	EST1_DNA_bind domain-containing protein.	Uncharacterized protein.	0.916
ENSLBEP00000006864	upf3a	ENSLBEP00000006864	ENSLBEP00000028508	EST1_DNA_bind domain-containing protein.	UPF3A regulator of nonsense mediated mRNA decay.	0.886
ENSLBEP00000006864	upf3b	ENSLBEP00000006864	ENSLBEP00000038475	EST1_DNA_bind domain-containing protein.	UPF3B regulator of nonsense mediated mRNA decay.	0.908
LOC109978929	LOC109991964	ENSLBEP00000007081	ENSLBEP00000019395	Uncharacterized protein.	Uncharacterized protein.	0.916
LOC109978929	rbm8a	ENSLBEP00000007081	ENSLBEP00000020448	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.956
LOC109978929	smg1	ENSLBEP00000007081	ENSLBEP00000005128	Uncharacterized protein.	SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.	0.972
LOC109978929	smg5	ENSLBEP00000007081	ENSLBEP00000002806	Uncharacterized protein.	SMG5 nonsense mediated mRNA decay factor.	0.893
LOC109978929	smg6	ENSLBEP00000007081	ENSLBEP00000002772	Uncharacterized protein.	SMG6 nonsense mediated mRNA decay factor.	0.843
LOC109978929	upf1	ENSLBEP00000007081	ENSLBEP00000037352	Uncharacterized protein.	Uncharacterized protein.	0.916
LOC109978929	upf3a	ENSLBEP00000007081	ENSLBEP00000028508	Uncharacterized protein.	UPF3A regulator of nonsense mediated mRNA decay.	0.886
LOC109978929	upf3b	ENSLBEP00000007081	ENSLBEP00000038475	Uncharacterized protein.	UPF3B regulator of nonsense mediated mRNA decay.	0.908
LOC109991964	ENSLBEP00000006864	ENSLBEP00000019395	ENSLBEP00000006864	Uncharacterized protein.	EST1_DNA_bind domain-containing protein.	0.916
LOC109991964	LOC109978929	ENSLBEP00000019395	ENSLBEP00000007081	Uncharacterized protein.	Uncharacterized protein.	0.916
LOC109991964	rbm8a	ENSLBEP00000019395	ENSLBEP00000020448	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.979
LOC109991964	smg1	ENSLBEP00000019395	ENSLBEP00000005128	Uncharacterized protein.	SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.	0.993