STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sec61bProtein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (94 aa)    
Predicted Functional Partners:
ENSLBEP00000008484
SEC61 translocon gamma subunit.
   
 0.999
sec63
SEC63 homolog, protein translocation regulator.
    
 
 0.998
LOC109982950
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.997
LOC109983902
Plug_translocon domain-containing protein.
   
 0.994
SEC61A1
Plug_translocon domain-containing protein.
   
 0.994
ssr3
Signal sequence receptor, gamma.
   
 0.993
ssr4
Signal sequence receptor, delta.
   
 0.993
ssr2
Translocon-associated protein subunit beta; TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.
   
 0.989
ENSLBEP00000000266
Uncharacterized protein.
   
 0.988
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.988
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.