STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110005537EFhand_Ca_insen domain-containing protein. (97 aa)    
Predicted Functional Partners:
LOC109985356
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.911
vcl
Vinculin.
   
 0.899
LOC110002537
Vinculin a.
   
 0.899
LOC109999580
Uncharacterized protein.
 
  
  0.889
ENSLBEP00000006533
Uncharacterized protein.
 
  
  0.882
ENSLBEP00000010466
Uncharacterized protein.
   
 0.871
LOC110000479
Zyxin.
   
 0.845
ENSLBEP00000001963
Uncharacterized protein.
   
  0.839
ENSLBEP00000009294
Membrane associated guanylate kinase, WW and PDZ domain containing 3b.
   
  0.839
ENSLBEP00000009364
Uncharacterized protein.
   
  0.839
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.