STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109989977Wolfram syndrome 1a (wolframin). (850 aa)    
Predicted Functional Partners:
atf6
Activating transcription factor 6.
    
 0.875
LOC109995675
BZIP domain-containing protein.
    
 0.875
xbp1
X-box binding protein 1.
     
 0.684
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.682
fam20b
FAM20B glycosaminoglycan xylosylkinase.
     
 0.635
samd7
Sterile alpha motif domain containing 7.
     
 0.555
stox1
Storkhead box 1.
      
 0.505
srrm4
Serine/arginine repetitive matrix 4.
      
 0.503
ENSLBEP00000005998
Uncharacterized protein.
      
 0.499
rpgrip1l
RPGRIP1 like.
      
 0.481
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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