STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109986513Si:dkey-106n21.1. (642 aa)    
Predicted Functional Partners:
gart
Phosphoribosylglycinamide formyltransferase.
  
  
 0.931
umps
Uridine monophosphate synthetase.
  
  
 0.899
dhodh
Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
  
 0.815
dpyd
Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.
  
  
 0.815
golt1a
Golgi transport 1A.
  
  
 0.809
LOC110004161
Golgi transport 1Bb.
  
  
 0.809
LOC109992181
Golgi transport 1Ba.
  
  
 0.809
cps1
Carbamoyl-phosphate synthase 1, mitochondrial.
  
  
 0.685
ENSLBEP00000004908
Uncharacterized protein.
  
  
 0.685
ENSLBEP00000008344
Glutamine amidotransferase type-1 domain-containing protein.
  
  
 0.685
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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