STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109992331Activating transcription factor 5b. (469 aa)    
Predicted Functional Partners:
ENSLBEP00000035391
CCAAT enhancer binding protein gamma.
   
 0.837
LOC109978647
Heme-binding protein soul4.
   
 
 0.775
LOC109986022
Protein phosphatase 1, regulatory subunit 15B.
     
 0.774
LOC109996404
Nuclear factor, interleukin 3 regulated, member 6.
  
 0.759
UBL5
Ubiquitin like 5.
     
 0.741
atf6
Activating transcription factor 6.
     
 0.740
LOC109995675
BZIP domain-containing protein.
     
 0.740
LOC109979379
Eukaryotic translation initiation factor 2, subunit 1 alpha b.
     
 0.728
LOC109979756
S1 motif domain-containing protein.
     
 0.728
LOC110000620
MAPK interacting serine/threonine kinase 2b; Belongs to the protein kinase superfamily.
     
 0.715
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.