ENSLBEP00000005065 protein (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSLBEP00000005065

Uncharacterized protein. (1036 aa)

Predicted Functional Partners:

ENSLBEP00000009802

0.987

LOC109998169

0.957

LOC109986674

0.946

LOC110000750

0.946

c3

0.946

LOC110000747

0.946

LOC109991914

0.899

LOC109991946

0.899

cfb

0.899

ENSLBEP00000005117

0.872

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000005065	ENSLBEP00000005117	ENSLBEP00000005065	ENSLBEP00000005117	Uncharacterized protein.	Uncharacterized protein.	0.872
ENSLBEP00000005065	ENSLBEP00000009802	ENSLBEP00000005065	ENSLBEP00000009802	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase S1 family.	0.987
ENSLBEP00000005065	LOC109986674	ENSLBEP00000005065	ENSLBEP00000009596	Uncharacterized protein.	Complement 4B (Chido blood group).	0.946
ENSLBEP00000005065	LOC109991914	ENSLBEP00000005065	ENSLBEP00000015470	Uncharacterized protein.	Si:ch1073-280e3.1; Belongs to the peptidase S1 family.	0.899
ENSLBEP00000005065	LOC109991946	ENSLBEP00000005065	ENSLBEP00000015603	Uncharacterized protein.	Si:ch1073-280e3.1; Belongs to the peptidase S1 family.	0.899
ENSLBEP00000005065	LOC109998169	ENSLBEP00000005065	ENSLBEP00000017729	Uncharacterized protein.	Complement component c3b, tandem duplicate 2.	0.957
ENSLBEP00000005065	LOC110000747	ENSLBEP00000005065	ENSLBEP00000027624	Uncharacterized protein.	Uncharacterized protein.	0.946
ENSLBEP00000005065	LOC110000750	ENSLBEP00000005065	ENSLBEP00000027370	Uncharacterized protein.	Uncharacterized protein.	0.946
ENSLBEP00000005065	c3	ENSLBEP00000005065	ENSLBEP00000027546	Uncharacterized protein.	Uncharacterized protein.	0.946
ENSLBEP00000005065	cfb	ENSLBEP00000005065	ENSLBEP00000020687	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase S1 family.	0.899
ENSLBEP00000005117	ENSLBEP00000005065	ENSLBEP00000005117	ENSLBEP00000005065	Uncharacterized protein.	Uncharacterized protein.	0.872
ENSLBEP00000005117	ENSLBEP00000009802	ENSLBEP00000005117	ENSLBEP00000009802	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase S1 family.	0.491
ENSLBEP00000005117	LOC109986674	ENSLBEP00000005117	ENSLBEP00000009596	Uncharacterized protein.	Complement 4B (Chido blood group).	0.740
ENSLBEP00000005117	LOC109991914	ENSLBEP00000005117	ENSLBEP00000015470	Uncharacterized protein.	Si:ch1073-280e3.1; Belongs to the peptidase S1 family.	0.860
ENSLBEP00000005117	LOC109991946	ENSLBEP00000005117	ENSLBEP00000015603	Uncharacterized protein.	Si:ch1073-280e3.1; Belongs to the peptidase S1 family.	0.860
ENSLBEP00000005117	LOC109998169	ENSLBEP00000005117	ENSLBEP00000017729	Uncharacterized protein.	Complement component c3b, tandem duplicate 2.	0.740
ENSLBEP00000005117	LOC110000747	ENSLBEP00000005117	ENSLBEP00000027624	Uncharacterized protein.	Uncharacterized protein.	0.740
ENSLBEP00000005117	LOC110000750	ENSLBEP00000005117	ENSLBEP00000027370	Uncharacterized protein.	Uncharacterized protein.	0.740
ENSLBEP00000005117	c3	ENSLBEP00000005117	ENSLBEP00000027546	Uncharacterized protein.	Uncharacterized protein.	0.740
ENSLBEP00000005117	cfb	ENSLBEP00000005117	ENSLBEP00000020687	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase S1 family.	0.862