tab3 protein (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tab3

TGF-beta activated kinase 1 (MAP3K7) binding protein 3. (609 aa)

Predicted Functional Partners:

LOC109975995

0.991

LOC109990925

0.991

tab1

0.990

ENSLBEP00000002780

0.987

LOC109989501

0.987

ripk1

0.987

LOC110002624

0.987

map3k7

0.987

ENSLBEP00000020184

0.985

ENSLBEP00000008892

0.974

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000002780	ENSLBEP00000008892	ENSLBEP00000002780	ENSLBEP00000008892	Uncharacterized protein.	Uncharacterized protein.	0.958
ENSLBEP00000002780	ENSLBEP00000020184	ENSLBEP00000002780	ENSLBEP00000020184	Uncharacterized protein.	Ubiquitin-conjugating enzyme E2 variant 1.	0.654
ENSLBEP00000002780	LOC109975995	ENSLBEP00000002780	ENSLBEP00000023249	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.970
ENSLBEP00000002780	LOC109990925	ENSLBEP00000002780	ENSLBEP00000034805	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.970
ENSLBEP00000002780	LOC110002624	ENSLBEP00000002780	ENSLBEP00000028087	Uncharacterized protein.	Protein kinase domain-containing protein.	0.933
ENSLBEP00000002780	ripk1	ENSLBEP00000002780	ENSLBEP00000022169	Uncharacterized protein.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.922
ENSLBEP00000002780	tab1	ENSLBEP00000002780	ENSLBEP00000015079	Uncharacterized protein.	TGF-beta activated kinase 1/MAP3K7 binding protein 1.	0.989
ENSLBEP00000002780	tab3	ENSLBEP00000002780	ENSLBEP00000005328	Uncharacterized protein.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.987
ENSLBEP00000008892	ENSLBEP00000002780	ENSLBEP00000008892	ENSLBEP00000002780	Uncharacterized protein.	Uncharacterized protein.	0.958
ENSLBEP00000008892	LOC109975995	ENSLBEP00000008892	ENSLBEP00000023249	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.933
ENSLBEP00000008892	LOC109989501	ENSLBEP00000008892	ENSLBEP00000011084	Uncharacterized protein.	Protein kinase domain-containing protein.	0.958
ENSLBEP00000008892	LOC109990925	ENSLBEP00000008892	ENSLBEP00000034805	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.933
ENSLBEP00000008892	LOC110002624	ENSLBEP00000008892	ENSLBEP00000028087	Uncharacterized protein.	Protein kinase domain-containing protein.	0.421
ENSLBEP00000008892	map3k7	ENSLBEP00000008892	ENSLBEP00000035516	Uncharacterized protein.	Mitogen-activated protein kinase kinase kinase 7.	0.958
ENSLBEP00000008892	ripk1	ENSLBEP00000008892	ENSLBEP00000022169	Uncharacterized protein.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.970
ENSLBEP00000008892	tab1	ENSLBEP00000008892	ENSLBEP00000015079	Uncharacterized protein.	TGF-beta activated kinase 1/MAP3K7 binding protein 1.	0.765
ENSLBEP00000008892	tab3	ENSLBEP00000008892	ENSLBEP00000005328	Uncharacterized protein.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.974
ENSLBEP00000020184	ENSLBEP00000002780	ENSLBEP00000020184	ENSLBEP00000002780	Ubiquitin-conjugating enzyme E2 variant 1.	Uncharacterized protein.	0.654
ENSLBEP00000020184	LOC109975995	ENSLBEP00000020184	ENSLBEP00000023249	Ubiquitin-conjugating enzyme E2 variant 1.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.803
ENSLBEP00000020184	LOC109989501	ENSLBEP00000020184	ENSLBEP00000011084	Ubiquitin-conjugating enzyme E2 variant 1.	Protein kinase domain-containing protein.	0.654