STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109996332YY1 associated factor 2. (187 aa)    
Predicted Functional Partners:
RING1
Ring finger protein 1.
    
 0.919
rnf2
Ring finger protein 2.
    
 0.919
pcgf6
Polycomb group ring finger 6.
    
 0.895
pcgf1
Polycomb group ring finger 1.
    
 0.894
ENSLBEP00000038339
Bmi1 polycomb ring finger oncogene 1a.
    
 0.865
pcgf2
Polycomb group ring finger 2.
    
 0.863
pcgf5
Polycomb group ring finger 5a.
    
 0.860
PCGF3
Polycomb group ring finger 3.
    
 0.853
LOC110002134
THAP-type domain-containing protein.
   
 0.841
LOC110000430
THAP-type domain-containing protein.
   
 0.841
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.