STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109987093Cerebral endothelial cell adhesion molecule. (590 aa)    
Predicted Functional Partners:
LOC109999826
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
   
0.826
LOC110001720
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
   
0.826
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
0.826
LOC109989586
Collagen beta(1-O)galactosyltransferase 1.
  
  
 
0.724
LOC109982766
Collagen beta(1-O)galactosyltransferase 2.
  
  
 
0.724
ogfod2
2-oxoglutarate and iron-dependent oxygenase domain containing 2.
   
 0.666
LOC109989195
Collagen beta(1-O)galactosyltransferase 1.
  
  
 
0.642
ENSLBEP00000005050
Uncharacterized protein.
    
 0.620
COL6A2
Collagen type VI alpha 2 chain.
   
 0.611
col6a2
Collagen, type VI, alpha 2.
   
 0.611
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.