STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110000430THAP-type domain-containing protein. (564 aa)    
Predicted Functional Partners:
LOC109995121
Transcription factor.
   
 0.921
LOC109975820
Uncharacterized protein.
   
 0.921
l3mbtl2
L3MBTL histone methyl-lysine binding protein 2.
    
 0.912
RING1
Ring finger protein 1.
    
 0.907
rnf2
Ring finger protein 2.
    
 0.907
pcgf6
Polycomb group ring finger 6.
    
 0.905
pcgf1
Polycomb group ring finger 1.
    
 0.905
MBTD1
Mbt domain containing 1.
    
 0.888
LOC109987741
Mbt domain containing 1.
    
 0.888
LOC109999680
BHLH domain-containing protein.
    
 0.874
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.