STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109992959U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (464 aa)    
Predicted Functional Partners:
LOC109978312
U2 small nuclear RNA auxiliary factor 1.
   
 0.977
LOC110001330
Uncharacterized protein.
   
 0.977
sf3b1
Splicing factor 3b, subunit 1.
 
 
 
 0.964
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 0.963
sf1
Splicing factor 1.
   
 
 0.960
snrnp70
RRM domain-containing protein.
   
 0.958
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.954
prpf19
Pre-mRNA processing factor 19.
   
 0.950
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 
 0.949
sf3b3
Splicing factor 3b, subunit 3.
   
 0.949
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.