STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109995623Uncharacterized protein. (252 aa)    
Predicted Functional Partners:
rabep2
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.862
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.862
rps27a
Ribosomal protein S27a.
    
  0.794
LOC109976847
Ubiquitin-like domain-containing protein.
    
 0.734
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.734
LOC109976768
RAB21, member RAS oncogene family.
    
 
 0.607
LOC110002747
Uncharacterized protein.
    
 
 0.607
LOC109991882
Uncharacterized protein.
    
 0.581
ENSLBEP00000014369
VHS domain-containing protein.
    
 0.581
LOC109998453
Golgi associated, gamma adaptin ear containing, ARF binding protein 1.
    
 0.581
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.