STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgef16Rho guanine nucleotide exchange factor (GEF) 16. (697 aa)    
Predicted Functional Partners:
epha8
Uncharacterized protein.
    
 0.692
ect2
Epithelial cell transforming 2.
     
0.661
LOC109983547
Ras homolog family member Gb.
    
 0.655
ENSLBEP00000034706
Ras homolog gene family, member Gd.
    
 0.655
ENSLBEP00000019154
Eph receptor A2 a.
    
 0.644
epha2
Eph receptor A2 b.
    
 0.644
ENSLBEP00000029904
Eph receptor A2 a.
    
 0.644
LOC109994148
Cell division cycle 42.
    
 0.620
CDC42
Cell division cycle 42.
    
 0.620
LOC109984175
Alsin Rho guanine nucleotide exchange factor ALS2 b.
    
 0.611
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.