STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mbd4Methyl-CpG binding domain protein 4. (520 aa)    
Predicted Functional Partners:
LOC109977925
Metastasis associated 1.
   
 0.872
mta2
Metastasis associated 1 family, member 2.
   
 0.872
LOC109993308
Metastasis associated 1 family, member 3.
   
 0.872
ENSLBEP00000004166
WD_REPEATS_REGION domain-containing protein.
    
 0.810
ENSLBEP00000013812
Uncharacterized protein.
    
 0.810
LOC110002888
Retinoblastoma binding protein 4, like.
    
 0.810
LOC109999551
WD repeat domain 73.
    
 0.810
RBBP4
RB binding protein 4, chromatin remodeling factor.
    
 0.810
ENSLBEP00000033219
WD_REPEATS_REGION domain-containing protein.
    
 0.810
hdac8
Histone deacetylase 8; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
    
 0.809
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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