STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col8a1C1q domain-containing protein. (721 aa)    
Predicted Functional Partners:
ENSLBEP00000007511
Endostatin domain-containing protein.
 
  
  0.754
ENSLBEP00000033866
Uncharacterized protein.
    
  0.724
ENSLBEP00000011403
Uncharacterized protein.
  
  0.654
ENSLBEP00000033991
Uncharacterized protein.
 
      0.651
col6a2
Collagen, type VI, alpha 2.
  
0.585
COL6A2
Collagen type VI alpha 2 chain.
  
0.582
col6a1
Collagen, type VI, alpha 1.
  
0.576
ENSLBEP00000006652
TROVE domain-containing protein.
    
 0.564
lig1
DNA ligase.
    
 0.560
ENSLBEP00000024282
Endostatin domain-containing protein.
 
  
  0.554
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.