STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110001030Vacuolar protein sorting 13 homolog A. (3161 aa)    
Predicted Functional Partners:
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.659
chtf18
AAA domain-containing protein.
    
   0.613
atp13a2
Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily.
   
 
 0.582
gak
Cyclin G associated kinase.
    
 
 0.581
synj1
Synaptojanin 1.
    
 
 0.569
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 
 0.502
tmem134
Transmembrane protein 134.
      
 0.499
DNAJC13
DnaJ heat shock protein family (Hsp40) member C13.
   
  
 0.487
spg11
SPG11 vesicle trafficking associated, spatacsin.
   
  
 0.453
VPS13B
Vacuolar protein sorting 13 homolog B.
   
  
0.443
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.