STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTUD1OTU deubiquitinase 1. (306 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.880
LOC109976847
Ubiquitin-like domain-containing protein.
    
  0.772
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.772
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
   
 0.664
ubb
Ubiquitin B.
    
 0.622
traf3
TNF receptor-associated factor 3.
    
 0.614
LOC110002709
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.614
traf7
TNF receptor-associated factor 7.
    
 0.604
LOC109975995
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.593
LOC109990925
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.593
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.