ENSLBEP00000008881 protein (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSLBEP00000008881

Uncharacterized protein. (352 aa)

Predicted Functional Partners:

RING1

0.792

rnf2

0.792

cbx8

0.786

LOC109985837

0.786

pcgf2

0.784

ENSLBEP00000038339

0.784

ENSLBEP00000026563

0.778

c9

0.761

ENSLBEP00000005065

0.725

cbx6

0.721

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000005065	ENSLBEP00000008881	ENSLBEP00000005065	ENSLBEP00000008881	Uncharacterized protein.	Uncharacterized protein.	0.725
ENSLBEP00000005065	ENSLBEP00000026563	ENSLBEP00000005065	ENSLBEP00000026563	Uncharacterized protein.	Uncharacterized protein.	0.725
ENSLBEP00000008881	ENSLBEP00000005065	ENSLBEP00000008881	ENSLBEP00000005065	Uncharacterized protein.	Uncharacterized protein.	0.725
ENSLBEP00000008881	ENSLBEP00000026563	ENSLBEP00000008881	ENSLBEP00000026563	Uncharacterized protein.	Uncharacterized protein.	0.778
ENSLBEP00000008881	ENSLBEP00000038339	ENSLBEP00000008881	ENSLBEP00000038339	Uncharacterized protein.	Bmi1 polycomb ring finger oncogene 1a.	0.784
ENSLBEP00000008881	LOC109985837	ENSLBEP00000008881	ENSLBEP00000034729	Uncharacterized protein.	Chromobox homolog 8a (Pc class homolog, Drosophila).	0.786
ENSLBEP00000008881	RING1	ENSLBEP00000008881	ENSLBEP00000029532	Uncharacterized protein.	Ring finger protein 1.	0.792
ENSLBEP00000008881	c9	ENSLBEP00000008881	ENSLBEP00000021913	Uncharacterized protein.	Complement component 9.	0.761
ENSLBEP00000008881	cbx6	ENSLBEP00000008881	ENSLBEP00000014301	Uncharacterized protein.	Chromobox homolog 6a.	0.721
ENSLBEP00000008881	cbx8	ENSLBEP00000008881	ENSLBEP00000003699	Uncharacterized protein.	Chromobox homolog 8b.	0.786
ENSLBEP00000008881	pcgf2	ENSLBEP00000008881	ENSLBEP00000021717	Uncharacterized protein.	Polycomb group ring finger 2.	0.784
ENSLBEP00000008881	rnf2	ENSLBEP00000008881	ENSLBEP00000036305	Uncharacterized protein.	Ring finger protein 2.	0.792
ENSLBEP00000026563	ENSLBEP00000005065	ENSLBEP00000026563	ENSLBEP00000005065	Uncharacterized protein.	Uncharacterized protein.	0.725
ENSLBEP00000026563	ENSLBEP00000008881	ENSLBEP00000026563	ENSLBEP00000008881	Uncharacterized protein.	Uncharacterized protein.	0.778
ENSLBEP00000026563	ENSLBEP00000038339	ENSLBEP00000026563	ENSLBEP00000038339	Uncharacterized protein.	Bmi1 polycomb ring finger oncogene 1a.	0.784
ENSLBEP00000026563	LOC109985837	ENSLBEP00000026563	ENSLBEP00000034729	Uncharacterized protein.	Chromobox homolog 8a (Pc class homolog, Drosophila).	0.786
ENSLBEP00000026563	RING1	ENSLBEP00000026563	ENSLBEP00000029532	Uncharacterized protein.	Ring finger protein 1.	0.792
ENSLBEP00000026563	c9	ENSLBEP00000026563	ENSLBEP00000021913	Uncharacterized protein.	Complement component 9.	0.761
ENSLBEP00000026563	cbx6	ENSLBEP00000026563	ENSLBEP00000014301	Uncharacterized protein.	Chromobox homolog 6a.	0.721
ENSLBEP00000026563	cbx8	ENSLBEP00000026563	ENSLBEP00000003699	Uncharacterized protein.	Chromobox homolog 8b.	0.786