STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
utp4UTP4 small subunit processome component. (684 aa)    
Predicted Functional Partners:
nop56
NOP56 ribonucleoprotein homolog.
   
 0.999
utp20
UTP20 small subunit processome component.
   
 0.999
imp4
IMP U3 small nucleolar ribonucleoprotein 4.
   
  0.999
utp6
UTP6 small subunit processome component.
   
 0.999
dcaf13
Ddb1 and cul4 associated factor 13.
   
 0.999
noc4l
Nucleolar complex associated 4 homolog.
   
 0.999
mphosph10
U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.
   
 0.999
rcl1
RNA terminal phosphate cyclase-like 1.
   
 0.999
LOC109984156
PWP2 small subunit processome component.
   
 0.999
nol6
Nucleolar protein 6.
   
 0.999
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.