STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109976879Tpd52 like 2b. (129 aa)    
Predicted Functional Partners:
LOC109997754
Tumor protein D52.
  
 
  
0.740
LOC110004822
GA binding protein transcription factor subunit beta 2a.
    
  0.693
snapin
SNAP associated protein.
   
 
  0.659
tpd52l1
Tpd52 like 1.
    
 
0.650
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
     
 0.634
gabpa
GA binding protein transcription factor subunit alpha.
    
   0.592
mal2
Mal, T cell differentiation protein 2 (gene/pseudogene).
   
 
 0.525
snx5
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 
  0.515
LOC110004901
Vps5 domain-containing protein.
   
 
  0.515
snx6
Sorting nexin 6.
   
 
  0.515
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.