STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109995875Small G protein signaling modulator 1a. (1040 aa)    
Predicted Functional Partners:
rabgef1
Uncharacterized protein.
     
 0.667
LOC110000582
Uncharacterized protein.
     
 0.667
LOC109977836
RAB guanine nucleotide exchange factor (GEF) 1.
     
 0.667
ENSLBEP00000029131
RAB guanine nucleotide exchange factor (GEF) 1, like.
     
 0.667
ENSLBEP00000006635
Uncharacterized protein.
    
 
 0.631
ENSLBEP00000014710
RAB9B, member RAS oncogene family.
    
 
 0.631
RAB9A
RAB9A, member RAS oncogene family.
    
 
 0.631
armc5
Armadillo repeat containing 5.
    
 
 0.622
rundc1
RUN domain containing 1.
    
 
 0.408
LOC109999739
Centrin 4.
    
   0.403
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.