STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109978003Xylulokinase homolog (H. influenzae). (467 aa)    
Predicted Functional Partners:
sord
Sorbitol dehydrogenase.
  
 
 0.944
LOC110004535
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
   
 0.940
gpd2
Glycerol-3-phosphate dehydrogenase 2 (mitochondrial).
  
 
 0.939
fuom
Fucose mutarotase.
  
 
 0.928
idnk
Uncharacterized protein.
    
 0.908
rgn
Regucalcin.
  
 
 0.906
rpia
Ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase).
    
 0.898
ENSLBEP00000010834
Uncharacterized protein.
    
 0.898
add3
Adducin 3 (gamma) b.
  
 
 0.881
add1
Adducin 1 (alpha).
  
 
 0.881
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.